PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000428265
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 1216aa    MW: 136780 Da    PI: 6.3989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000428265genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92e-49261522128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPtdeelv++yL++k+++k++++ e ik++diyk++PwdLpk+  a++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+++s+  
  MDP0000428265  26 LPGFRFHPTDEELVDFYLRRKIQKKPISF-ELIKSIDIYKYDPWDLPKT--AGDKEWYFFCKRGRKYKNSFRPNRVTGSGFWKATGIDKPIHSHgg 118
                    59*************************99.99***************44..589***************************************965 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++  glkktLv+y+g+a kg+ktdW+mhe+rl
  MDP0000428265 119 eGHACNGLKKTLVYYRGSAGKGSKTDWMMHEFRL 152
                    444559**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.42725190IPR003441NAC domain
SuperFamilySSF1019415.23E-5326190IPR003441NAC domain
PfamPF023657.7E-2527152IPR003441NAC domain
Gene3DG3DSA:3.40.50.3004.9E-67407624IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525403.66E-107408745IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5172253.319421748IPR000795Transcription factor, GTP-binding domain
PfamPF000095.2E-64421746No hitNo description
TIGRFAMsTIGR002312.0E-16424580IPR005225Small GTP-binding protein domain
CDDcd018853.10E-119424634No hitNo description
PRINTSPR003152.2E-13425438IPR000795Transcription factor, GTP-binding domain
PROSITE patternPS003010462477IPR031157Tr-type G domain, conserved site
PRINTSPR003152.2E-13469477IPR000795Transcription factor, GTP-binding domain
PRINTSPR003152.2E-13505515IPR000795Transcription factor, GTP-binding domain
PRINTSPR003152.2E-13521532IPR000795Transcription factor, GTP-binding domain
PRINTSPR003152.2E-13557566IPR000795Transcription factor, GTP-binding domain
Gene3DG3DSA:3.90.1430.104.3E-37626730No hitNo description
Gene3DG3DSA:2.40.30.101.1E-51742888No hitNo description
SuperFamilySSF504473.09E-39746880IPR009000Translation protein, beta-barrel domain
CDDcd037007.25E-39780872No hitNo description
PfamPF031444.2E-11797872IPR004161Translation elongation factor EFTu-like, domain 2
SuperFamilySSF549806.83E-18888964IPR009022Elongation factor G, III-V domain
Gene3DG3DSA:3.30.70.8703.6E-24890965No hitNo description
PfamPF144929.0E-12891953IPR009022Elongation factor G, III-V domain
CDDcd016818.39E-989631135No hitNo description
SuperFamilySSF542118.85E-659661130IPR020568Ribosomal protein S5 domain 2-type fold
Gene3DG3DSA:3.30.230.102.9E-679771131IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
SMARTSM008894.5E-2610101126IPR005517Translation elongation factor EFG/EF2, domain IV
PfamPF037642.6E-3310141126IPR005517Translation elongation factor EFG/EF2, domain IV
PfamPF006798.6E-1011281187IPR000640Translation elongation factor EFG, V domain
SMARTSM008381.0E-411281206IPR000640Translation elongation factor EFG, V domain
SuperFamilySSF549802.64E-1511311187IPR009022Elongation factor G, III-V domain
CDDcd040962.38E-2911311200No hitNo description
Gene3DG3DSA:3.30.70.2401.1E-2311321187IPR000640Translation elongation factor EFG, V domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1216 aa     Download sequence    Send to blast
MDNTYYSPST KDDHQYTDDD EDDVQLPGFR FHPTDEELVD FYLRRKIQKK PISFELIKSI  60
DIYKYDPWDL PKTAGDKEWY FFCKRGRKYK NSFRPNRVTG SGFWKATGID KPIHSHGGEG  120
HACNGLKKTL VYYRGSAGKG SKTDWMMHEF RLPNSSSSNE XNNRSSNPKN MNTDPQQEAE  180
IWTLCRIFKR NVSYRKYTPD WRDLSAAKRH PTDTVNSKKF ATDRQDLLDQ SNTYISFGAS  240
DICYEEKPLV NHTNNINSXN GSHQLHAHAV GQLSSNMQQP NSTHPYMDTF SNFSFQDLEN  300
DLLNENWDEL RSVVQQLAFD PTPFPVGIIS RVRAPSLRPS LLLPNAYSLH QGIAALSPPP  360
SQLPAEAPAT EEPKKEEKVL IVFLEVTFEE ETRWYDARFA ILVQWVKFTA EELRRIMDYK  420
HNIRNMSVIA HVDHGKSTLT DSLVAAAGII AQEVAGDVRM TDTRADEAER GITIKSTGIS  480
LYYEMTDESL SRFKGERNGN EYLINLIDSP GHVDFSSEVT AALRITDGAL VVVDCIEGVC  540
VQTETVLRQA LGERIRPVLT VNKMDRCFLE LQVDGEEAYQ TFQRVIENAN VIMATYEDPL  600
LGDVQVYPEK GTVAFSAGLH GWAFTLTNFA KMYASKFGVD ESKMMERLWG ENFFDPATKK  660
WTSKNTGTAT CKRGFVQFCY EPIKQIIKTC MNDQKDKLWP MLTKLGVTMK SDEKDLMGKA  720
LMKRVMQTWL PASTALLEMM IFHLPSPSTA QRYRVENLYE GPLDDQYANA IRNCDPEGPL  780
MLYVSKMIPA SDKGRFFAFG RVFAGKVQTG LKVRIMGPNF VPGEKKDLYV KNVQRTVIWM  840
GKRQETVEDV PCGNTVALVG LDQFITKNAT LTNEKEVDAH PIRAMKFSVS PVVRVAVQCK  900
VASDLPKLVE GLKRLAKSDP MVVCSIEESG EHIIAGAGEL HLEICLKDLQ DDFMGGAEII  960
KSDPVVSFRE TVLDKSCRTV MSKSPNKHNR LYMEARPLEE GLPEAIDXGR IGPRDDPKIR  1020
SKILAEEFGW DKDLAKKIWC FGPETTGPNM VVDMCKGVQY LNEIKDSVVA GFQWASKEGA  1080
LAEENMRGIC FEVCDVVLHA DAIHRGGGQV IPTARRVIYA SQLTAKPRLL EPVYLVEIQA  1140
PEGALGGIYS VLNQKRGHVF EEMQRPGTPL YNIKAYLPXV ESFGFSGKST LTDSLVAAAG  1200
IIAQEVAGDV RMTDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v6w_Az0.040611872784Elongation factor 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.54200.0bud| cell culture| flower| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7321800.0JQ732180.1 Prunus persica translation elongation factor 2 (TEF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361805.10.0PREDICTED: elongation factor 2
RefseqXP_009361806.10.0PREDICTED: elongation factor 2
RefseqXP_009361807.10.0PREDICTED: elongation factor 2
SwissprotQ9ASR10.0EF2_ARATH; Elongation factor 2
TrEMBLI3UIH90.0I3UIH9_PRUPE; Translation elongation factor 2
STRINGPOPTR_0007s08390.10.0(Populus trichocarpa)
STRINGGLYMA15G40860.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.15e-78NAC family protein